Software packages

[Python & R] spacemake: analysis and processing of large-scale spatial transcriptomicsc data. Accompanies publication [25].

[Python] novoSpaRc: spatial reconstruction of single-cell gene expression. Accompanies publications [18] and [24].

[R] DistMap: single-cell spatial distributed mapping. Accompanies publication [15].

Resources

[shiny] HuMuSC: Human muscle-derived single-cell atlas. Accompanies publication [19].

[shiny] mgsca: Glomerulus single-cell gene expression atlas. Accompanies publication [16].

[shiny] DVEX: Drosophila Virtual Embryo eXplorer. Accompanies publication [15].